miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|282170058|gb|GT985283.1|GT985283 GCTAGATAGCTAATTTCTAAGATTTAATCAATCATGTTTGGATTTACAATATTACAGGTTAATTATAAACTAATTTCTAA
ACTTATAATTTTTATAAGTCTTTCATCTTTTAAGATATTTCTCTTTATTTGTTGCTAGAACAAATAGCGATGACAATGAT
GCTCCTATTAAGCCACCAATTAGTGATCGTCGTAATCTAACTTGCCATAATTGAGATTTAATTAATTCTTTTGCGACATC
ATTTGTAACTTGTGGGTTTGATAAACCTCTGAATAAGACGCCAGTCAAAGTTCCAGCAGCAACTGTATTTATATCTTCAT
TTGAATCATTTAAAAAACCTAATCCAACTCCAATAGCTGAATAGAGTAAGGCAACTACACCAAACGTGTTTCCAGTGACA
GCACCAGTTTTTCCAATGTAATTTAATATTTGTGATCTACGAACTGCCCATGAAAGAGGTTTATTAACATGATTAGAATC
GATTGCTGCTGTATTTAGTGATGTTAATTTAAATCCATTATAACAACCAATAACTCCACCAATAGAAGCACCAGCCATAA
CAGAACCTCCAATTTGACTAAAAGCTAATTCAAATCTACCACGAGAAGGTCGATTACCACCATCTAGATAAATGTAATCA
GCCGATTCTTGGTTACCTAAAAGGATTTTAGGATCAAGATTTAAGTAAGGTGATTTAAATCCCACATTTCCAATAGGAAC
ATTGAAAGGTGGAATTTCTATCTGAATCCATAATCAC




Most similar to sp|Q5XH94|TIM23_XENTR

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5XH94|TIM23_XENTR Mitochondrial import inner membrane
           translocase subunit Tim23 OS=Xenopus tropicalis
           GN=timm23 PE=2 SV=1
          Length = 209

 Score =  112 bits (280), Expect = 3e-24
 Identities = 75/201 (37%), Positives = 109/201 (54%), Gaps = 1/201 (0%)
 Frame = -2

Query: 720 VPIGNVGFKSPYLNLDPKILLGNQESADYIYLDGGNRPSRGRFELAFSQIGGSVMAGASI 541
           VP+  +   SPYLN+DP+ L+  Q++ ++I   G N+ +RGRFELAF  IGG  M+GA+ 
Sbjct: 34  VPLTGMSPLSPYLNVDPRYLV--QDNDEFILPTGANK-TRGRFELAFFTIGGCCMSGAAF 90

Query: 540 GGVIGCYNGFKLTSLNTAAIDSNHVNKPLSWAVRRS-QILNYIGKTGAVTGNTFGVVALL 364
           G V G   GFK T             + ++W+  ++ QILN + + GA+  NT G +ALL
Sbjct: 91  GAVNGLRLGFKET-------------QNMAWSKPKNVQILNMVTRQGALWANTLGSLALL 137

Query: 363 YSAIGVGLGFLNDSNEDINTVAAGTLTGVLFRGLSNPQVTNDVAKELIKSQLWQVRLRRS 184
           YSA GV +     + +D+NT+AAGT+TG+L++                        LR  
Sbjct: 138 YSAFGVIIEKTRGAEDDLNTIAAGTMTGMLYKSTGG--------------------LRGV 177

Query: 183 LIGGLIGASLSSLFVLATNKE 121
             GGL G +L+S F L  N E
Sbjct: 178 ARGGLAGLALTSAFALYNNWE 198